PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK23488.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NAC
Protein Properties Length: 121aa    MW: 13971.2 Da    PI: 8.1864
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK23488.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM127.88.6e-40181201103
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lppGfrFhPtdeel+++yL +kv +++++  ++i+evd++k+ePw+Lp+k+k +ekewyf+s rd+ky+tg r+nrat++gyWkatgkd+e++s+ + +l
  PK23488.1  18 LPPGFRFHPTDEELITYYLLNKVLDSSFTG-RAIAEVDLNKCEPWQLPEKAKMGEKEWYFYSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSkTCSL 116
                79*************************999.89***************99999****************************************9744456 PP

        NAM 100 vglk 103
                vg+k
  PK23488.1 117 VGMK 120
                8887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-4313120IPR003441NAC domain
PROSITE profilePS5100540.71618121IPR003441NAC domain
PfamPF023651.8E-1719120IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
XNQMEIINNG SSDNSSHLPP GFRFHPTDEE LITYYLLNKV LDSSFTGRAI AEVDLNKCEP  60
WQLPEKAKMG EKEWYFYSLR DRKYPTGLRT NRATEAGYWK ATGKDREIYS SKTCSLVGMK  120
X
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-351812017117NO APICAL MERISTEM PROTEIN
1ut4_B3e-351812017117NO APICAL MERISTEM PROTEIN
1ut7_A3e-351812017117NO APICAL MERISTEM PROTEIN
1ut7_B3e-351812017117NO APICAL MERISTEM PROTEIN
3swm_A3e-351812020120NAC domain-containing protein 19
3swm_B3e-351812020120NAC domain-containing protein 19
3swm_C3e-351812020120NAC domain-containing protein 19
3swm_D3e-351812020120NAC domain-containing protein 19
3swp_A3e-351812020120NAC domain-containing protein 19
3swp_B3e-351812020120NAC domain-containing protein 19
3swp_C3e-351812020120NAC domain-containing protein 19
3swp_D3e-351812020120NAC domain-containing protein 19
4dul_A3e-351812017117NAC domain-containing protein 19
4dul_B3e-351812017117NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003526018.15e-71PREDICTED: protein CUP-SHAPED COTYLEDON 2-like
SwissprotO040172e-66NAC98_ARATH; Protein CUP-SHAPED COTYLEDON 2
TrEMBLA0A0B2SGJ68e-74A0A0B2SGJ6_GLYSO; Protein CUP-SHAPED COTYLEDON 2
STRINGGLYMA06G35660.12e-70(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36893463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53950.19e-68NAC family protein